POSBIOTM-NER: a trainable biomedical named-entity recognition system
نویسندگان
چکیده
SUMMARY POSBIOTM-NER is a trainable biomedical named-entity recognition system. POSBIOTM-NER can be automatically trained and adapted to new datasets without performance degradation, using CRF (conditional random field) machine learning techniques and automatic linguistic feature analysis. Currently, we have trained our system on three different datasets. GENIA-NER was trained based on GENIA Corpus, GENE-NER based on BioCreative data and GPCR-NER based on our own POSBIOTM/NE corpus, respectively, which would be used in GPCR-related pathway extraction.
منابع مشابه
POSBIOTM-NER in the Shared Task of BioNLP/NLPBA2004
Two classifiers -Support Vector Machine (SVM) and Conditional Random Fields (CRFs) are applied here for the recognition of biomedical named entities. According to their different characteristics, the results of two classifiers are merged to achieve better performance. We propose an automatic corpus expansion method for SVM and CRF to overcome the shortage of the annotated training data. In addi...
متن کاملPAYMA: A Tagged Corpus of Persian Named Entities
The goal in the named entity recognition task is to classify proper nouns of a piece of text into classes such as person, location, and organization. Named entity recognition is an important preprocessing step in many natural language processing tasks such as question-answering and summarization. Although many research studies have been conducted in this area in English and the state-of-the-art...
متن کاملسیستم شناسایی و طبقه‌بندی موجودیت‌های اسمی در متون زبان فارسی بر پایه شبکه عصبی
Named Entity Recognition (NER) is a fundamental task in natural language processing and also known as a subset of information extraction. We seek to locate and classify named entities in text into predefined categories such as the names of persons, organizations, locations, expressions of times, etc. Named Entity Recognition for English texts has been researched widely for the past years, howev...
متن کاملپیکره اعلام: یک پیکره استاندارد واحدهای اسمی برای زبان فارسی
Named entity recognition (NER) is a natural language processing (NLP) problem that is mainly used for text summarization, data mining, data retrieval, question and answering, machine translation, and document classification systems. A NER system is tasked with determining the border of each named entity, recognizing its type and classifying it into predefined categories. The categories of named...
متن کاملAdapting an NER-System for German to the Biomedical Domain
In this paper, we report the adaptation of a named entity recognition (NER) system to the biomedical domain in order to participate in the ”Shared Task Bio-Entity Recognition”. The system is originally developed for German NER that shares characteristics with the biomedical task. To facilitate adaptability, the system is knowledge-poor and utilizes unlabeled data. Investigating the adaptability...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 21 11 شماره
صفحات -
تاریخ انتشار 2005